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Research Focus:

Cancer covers a broad spectrum of diseases, in every tissue of the body. Tissues are composed of cells, which normally grow slowly, under the tight control of a network of regulatory genes.

The slow accumulation of activating mutations in growth genes, and inactivating mutations in suppressor genes, eventually allows a cell to grow out of control. Relapse is due to the development of resistant cells, rather than the escape of sensitive cells, suggesting the need for new approaches to treatment of the disease.

This laboratory is developing sequence-specific oligonucleotides against cancer genes and neurological genes for use as diagnostics and therapeutics. The cancer gene mRNAs being studied include the CCND1, HER2, IGF1R, KRAS2, and MYCC in breast cancer, prostate cancer, colon cancer, lung cancer, and brain cancer.

In a new direction, we have begun to knock down two microRNAs, miR-17 and miR-21, which are overexpressed in triple negative breast cancer cells. Micro RNA precursor duplexes were thought to include an active guide strand and an inactive passenger strand.

However, we discovered passenger strand activity in triple negative breast cancer cells, when anti-miR-17-5p depressed PTEN and PDCD4 protein, instead of raising them. We have observed that nuclease-resistant sequences that specifically block miR-17 or miR-21 interdict triple negative breast cancer cell growth.

To translate microRNA blockade into clinical cancer management, Thomas Jefferson University has licensed our technology to Bound Therapeutics LLC

To move our approaches into the clinic, we must identify the most efficacious antisense target sequences, their mechanisms and physiological effects. We must design and synthesize potent RNA analogs capable of surviving in the bloodstream following administration, and we must determine their structures bound to cellular organelles.

 

To see active cancer gene mRNAs from outside the body, we have designed and synthesized peptide analogs that enable receptor-specific uptake and mRNA hybridization of peptide nucleic acids (PNA). By adding a radionuclide chelator to one end of a PNA-peptide, we radioimage cancerous or precancerous regions by single photon emission computed tomography (SPECT) or positron emission tomography (PET).

By using a branched dendrimer PNA-peptide with multiple chelators to bind gadolinium, we see cancer gene mRNA by magnetic resonance imaging (MRI). By using twin near infrared fluorophores on the ends of a stemless PNA molecular beacon, we see cancer gene mRNA by near infrared fluorescence (NIRF).

Three-dimensional touch-and-feel molecular modeling and surgical simulation are being integrated with our genetic imaging scans. This study includes touch-and-feel simulations of the kinetic pathway of ligand docking with macromolecules in order to cull out kinetically unfavorable ligand designs.

Both the RNA imaging approach and the virtual reality approach are being applied to the problem of varying levels of MAOA mRNA and D2DR mRNA in certain brain cells that react strongly to cocaine. We are developing mRNA imaging agents to visualize and quantitate those two neural mRNAs in vivo. Similarly, we are developing mRNA imaging agents that target the NLGN4Y mRNA, which might be implicated in the development of autism spectrum disorders, when overexpressed. Finally, we have designed PNA sequences targeting HTT mRNA, for PET imaging of the efficacy of antisense therapy in Huntington’s disease.